Selected papers and other peer-reviewed publications by Jarek Meller

Note that the copyrights belong to the publishers of the respective journals, as indicated in the reprints (if included).

M. Wagner, R. Adamczak, A. Porollo and J. Meller; Linear Regression Models for Solvent Accessibility Prediction in Proteins, Journal of Computational Biology, to appear (2005)

C. E. Petre-Draviam, E. B.Williams, C. J. Burd, A. Gladden, H. Moghadam, J. Meller, J. A. Diehl, and K. E. Knudsen; A Central Domain of Cyclin D1 Mediates Nuclear Receptor Co-repressor Activity, Oncogene, to appear (2005)

R. Adamczak, A. Porollo and J. Meller; Combining Prediction of Secondary Structures and Solvent Accessibility in Proteins, Proteins: Structure, Function and Bioinformatics, to appear (2005)

M. Wagner, J. Meller and R. Elber; Large-Scale Linear Programming Techniques for the Design of Protein Folding Potentials, Mathematical Programming, Volume 101 (2): 301-318 (2004)

A. Porollo, R. Adamczak and J. Meller; Polyview: A Flexible Visualization Tool for Structural and Functional Annotations of Proteins, Bioinformatics, vol. 20 (15): 2460-62 (2004)

R. Adamczak and J. Meller; On the Transferability of Folding and Threading Potentials and Sequence-Independent Filters for Protein Folding Simulations, Molecular Physics, vol. 102 (11-12): 1291-1305 (2004)

M.-D. Filippi, C. E. Harris, J. Meller, Y. Gu, Y. Zheng and A. Williams; Localization of Rac2 via the C terminus and aspartic acid 150 specifies superoxide generation, actin polarity and chemotaxis in neutrophils, Nature Immunology 5: 744-751 (2004)

R. Adamczak, A. Porollo and J. Meller; Accurate Prediction of Solvent Accessibility Using Neural Networks Based Regression, Proteins: Structure, Function and Bioinformatics, 56(4):753-67 (2004)

M. F. Czyzyk-Krzeska and J. Meller; Von Hippel-Lindau Tumor Suppressor: Not Only HIF’s Executioner, Trends in Molecular Medicine, 10 (4):146-9 (2004)

J. Meller; Advances in Protein Structure Predictions: Algorithms and Applications, ISSN 0239-7455, Warsaw 2004 (Part I)

M. Tang, P. Huang, J. Meller, W. Zhong, T. Farkas and X. Jiang; Mutations within P2 Domain of Norovirus Capsid Affect Binding to Human Histo-Blood Group Antigens: Evidence for a Binding Pocket, Journal of Virology, 77 (23): 12562-71 (2003)

M. Turowski, N. Yamakawa, J. Meller, K. Kimata, T. Ikegami, K. Hosoya, N. Tanaka and E.R. Thornton; Deuterium Isotope Effects on Hydrophobic Interactions. The Importance of Dispersion Interactions in the Hydrophobic Phase, Journal of American Chemical Society, 125: 13836-13849 (2003)

A. Porollo, R. Adamczak, M. Wagner and J. Meller; Maximum Feasibility Approach for Consensus Classifiers: Applications to Protein Structure Prediction, CIRAS 2003

J. Meller, J. P. Malrieu and J. L. Heully; Size-consistent multireference CI through the dressing of the norm of determinants, Molecular Physics, vol. 101 (13): 2029-2041 (2003)

A. V. Kuznetsova, J. Meller, P. O. Schnell, J. A. Nash, Y. Sanchez, J. W. Conaway, R. C. Conaway and M. F. Czyzyk-Krzeska; VHL binds hyperphosphorylated large subunit of RNA Polymerase II through a proline hydroxylation motif and targets it for ubiquitination, PNAS vol. 100 (5), 2706-2711 (2003)

J. Meller, M. Wagner and R. Elber, Maximum Feasibility Guideline to the Design and Analysis of Protein Folding Potentials, Journal of Computational Chemistry 23: 111-118 (2002)

J. Meller and R. Elber; Protein Recognition by Sequence-to-Structure Fitness: Bridging Efficiency and Capacity of Threading Models, in Computational Methods for Protein Folding: A Special Volume of Advances in Chemical Physics, ed. R. A. Friesner, John Wiley & Sons 2002

J. Meller; Molecular Dynamics, In: Encyclopedia of Life Sciences, Macmillan Reference Ltd, 2001

J. Meller and R. Elber, Linear Programming Optimization and a Double Statistical Filter for Protein Threading Potentials, Proteins Structure, Function and Genetics, 45: 241-261 (2001)

A. Frary, T. C. Nesbitt, A. Frary, S. Grandillo, E. van der Knaap, B. Cong, J. Liu, J. Meller, R. Elber, K. B. Alpert, S. D. Tanksley; fw2.2: A Quantitative Trait Locus Key to the Evolution of Tomato Fruit Size, Science, 289: 85-88 (2000)

J. Meller and R.Elber; LOOPP - Lerning, Observing and Outputting Protein Patterns, a public domain package for protein recognition and designing folding potentials, available as part of NIH resources at Cornell Theory Center, Ithaca 2000

Wan J, Meller J, Hada M, Ehara M, Nakatsuji H; Electronic excitation spectra of furan and pyrrole: Revisited by the symmetry adapted cluster-configuration interaction method, Journal of Chemical Physics, 113: 7853-7866 (2000)

J. Meller and W. Duch; SGA derivation of matrix elements between spin-adapted perturbative wavefunctions, International Journal of Quantum Chemistry, 74, 123-133 (1999)

R. Elber, J. Meller and R. Olender; Stochastic Path Approach to Compute Atomically Detailed Trajectories: Application to the Folding of C Peptide, Journal of Physical Chemistry B, 103, 899-911 (1999)

J. Meller and R. Elber; Computer Simulations of Carbon Monoxide Photodissociation in Myoglobin: Structural Interpretation of the B states, Biophysical Journal, 74, 789-802 (1998)

J. Meller; New computational algorithms based on the Configuration Interaction method, PhD Thesis, Nicholas Copernicus University, Torun 1996

J. Meller, J.P. Malrieu and R. Caballol; State-specific Coupled Cluster type dressing of Multireference Singles and Doubles Configuration Interaction matrix, Journal of Chemical Physics, 104: 4068 (1996)

L. Adamowicz, R. Caballol, J.P. Malrieu and J. Meller; A general bridge between CI and CC methods: a multistate solution, Chemical Physics Letters, 259: 619 (1996)

J. Meller, J. P. Malrieu and J. L. Heully; Multireference size-consistent self consistent CI method: a few applications to ground and excited states, Chemical Physics Letters, 244: 440 (1995)

W. Duch and J. Meller; On multireference superdirect configuration interaction in third order, International Journal of Quantum Chemistry, 50 (1994)

J. Meller, J. L. Heully and J. P. Malrieu; Size-consistent self consistent combination of selected CI and perturbation theory, Chemical Physics Letters, 218 (1994)

R. S. Ingarden and J. Meller; Temperature in Linguistics as a Model of Thermodynamics, Open Systems and Informational Dynamics, Vol. 2, No 2 (1994)

B. G. Wybourne and J. Meller; Enumeration of the order 14 invariants formed from the Riemann tensor, Journal of Physics A: Mathematics and General, 25 (1992)

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